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Protein Structural Analysis: Binding Sites to Distant Homologs

Description:

This course covers how to visualize and annotate 3D protein structures using NCBI's Cn3D program, identify conserved domain(s) and ligand binding sites in a protein, search for other proteins containing similar domain(s), explore a 3D modeling template for the query protein and find distant sequence homologs that may not be identified by BLAST.

To register, please visit the Registration Page.

Webpage Modified: October 14, 2009

Formats for Training:

Class

Class

	Dates	Times	Location
	2009/12/03	1.30PM-3.30PM	NIH Library Training Room, First Floor --Registration Page
	Hands-on. Free. HHS staff only. For more information call 301-496-1080
	Objectives: To visualize and annotate 3D protein structures using Cn3D, a free helper application for your web browser that allows you to view 3-dimensional structures To identify the conserved domain(s) present in the query protein and features such as ligand binding sites To search for other proteins containing similar domain(s) To explore 3D modeling template for the query protein To obtain distant sequence homologs that may not be identified by BLAST
	Who Should Attend: Any NIH staff member with an interest in the topic

	Useful Handouts/Links: This class is based on one of the mini-courses developed by the instructor Dr. Medha Bhagwat while working at NCBI NCBI Mini-Courses


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>	NIH Library Classes: November - December 2009
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	Upcoming Training Classes

>	EndNote: Managing Your Search Results Dec 15
>	PubMed: Understanding the Basics Dec 15
>	Protein Structural Analysis: Binding Sites to Distant Homologs Dec 03

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